PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12139
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 436aa    MW: 47620.1 Da    PI: 7.7717
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12139genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41.1e-07112132526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f   GtC+yG++C++ H+
  PEQU_12139 112 ICSYFIL-GTCSYGESCRYLHS 132
                 6997777.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.0232349IPR000571Zinc finger, CCCH-type
SMARTSM003561.12548IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-4107133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6109132IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4112132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5112132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.634112134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.7E-48133425IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003207.8E-6138177IPR001680WD40 repeat
SuperFamilySSF509788.97E-48140431IPR017986WD40-repeat-containing domain
PfamPF004004.0E-6142177IPR001680WD40 repeat
PROSITE profilePS5029420.514145394IPR017986WD40-repeat-containing domain
CDDcd002005.00E-39145425No hitNo description
PROSITE profilePS5008214.719145186IPR001680WD40 repeat
PROSITE patternPS006780164178IPR019775WD40 repeat, conserved site
PRINTSPR003208.8E-7164178IPR020472G-protein beta WD-40 repeat
SMARTSM0032069217254IPR001680WD40 repeat
SMARTSM003200.0046261298IPR001680WD40 repeat
PfamPF004000.0075266298IPR001680WD40 repeat
PROSITE profilePS5008211.645268307IPR001680WD40 repeat
PROSITE patternPS006780285299IPR019775WD40 repeat, conserved site
PRINTSPR003208.8E-7285299IPR020472G-protein beta WD-40 repeat
SMARTSM003203.0E-4301338IPR001680WD40 repeat
PfamPF004000.0031303337IPR001680WD40 repeat
PRINTSPR003208.8E-7325339IPR020472G-protein beta WD-40 repeat
SMARTSM003200.77342385IPR001680WD40 repeat
SMARTSM003203.7388425IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDIERYGNRR IQSRIGSQAA PDRANNKVCY HWRAGRCHRH PCPYLHSELP EHSDGGAKRA  60
AVADERGFRS QGLVWRNPNT NGNSGPHSKW GKGRGGGAVG GVRPQRKALD TICSYFILGT  120
CSYGESCRYL HSWFLSDSIA LLTPLKGHQK DVTGIAFPAA SDKLYTGSKD ESLRIWDCQT  180
GQCVGVVNLG GDVGCMISEG PWIFVGVPNA IKAWNTQTGT DLSLSGPIGQ VYAMSVGNEM  240
LFAGTQDGRI LAWRFRAAGD CFEPAASLVG HQLPVVSLVV GAMRLYSGSM DHTIRVWDLS  300
TLQCIQTLTD HTSVVMSVLC WDQFLLSCSL DKTIKVWVAT ESGKLEVTYT HQEEHGVLAL  360
CGMHDAQAKP VLFCSCNDNT VRLYDLPSFN ERGKIFSKEE VRAIQIGPGG LFFTGDGSGE  420
LKVWKWLTSE VSAAGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovr_B2e-18124388172391F-box/WD repeat protein 7
2ovq_B2e-18124388172391F-box/WD repeat protein 7
2ovp_B2e-18124388172391F-box/WD repeat protein 7
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398076.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLM0SRU90.0M0SRU9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P24880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein